PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.21611s0001.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family G2-like
Protein Properties Length: 138aa    MW: 15229.7 Da    PI: 5.2564
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.21611s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like31.83.2e-101203655
               G2-like 36 mkvkgLtlehvkSHLQkYRl 55
                          m+vk+Ltl+hvkSHLQ+YR+
  Araha.21611s0001.1.p  1 MNVKDLTLAHVKSHLQMYRT 20
                          9******************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-8120IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MNVKDLTLAH VKSHLQMYRT VKCTDKGSSG EGKVEKEAEQ RIEDNNNNEE ADEGTDTNSP  60
NSSTVQKTQR APWSSTKGVP RSISTQADPH LGTTQHTKEN EEKEATNIHL NLEFTLGRPS  120
WGMDYAEPSS DLTLLKC*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0486910.0AY048691.1 Arabidopsis thaliana GARP-like putative transcription factor KANADI4 (KAN4) mRNA, complete cds.
GenBankBT0260530.0BT026053.1 Arabidopsis thaliana At5g42630 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002863758.16e-98hypothetical protein ARALYDRAFT_494773
SwissprotQ9FJV54e-88KAN4_ARATH; Probable transcription factor KAN4
TrEMBLD7MS197e-98D7MS19_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.8__589__AT5G42630.12e-97(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65722844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.14e-79G2-like family protein